SCI

14 June 2024

Clinical validation of a cell-free DNA fragmentome assay for augmentation of lung cancer early detection

(Cancer Discovery, IF: 29.1)

  • Peter J. Mazzone, Peter B. Bach, Jacob Carey, Caitlin A. Schonewolf, Katalin Bognar, Manmeet S. Ahluwalia, Marcia Cruz-Correa, David Gierada, Sonali Kotagiri, Kathryn Lloyd, Fabien Maldonado, Jesse D. Ortendahl, Lecia V. Sequist, Gerard A. Silvestri, Nichole Tanner, Jeffrey C. Thompson, Anil Vachani, Kwok-Kin Wong, Ali H. Zaidi, Joseph Catallini, Ariel Gershman, Keith Lumbard, Laurel K. Millberg, Jeff Nawrocki, Carter Portwood, Aakanksha Rangnekar, Carolina Campos Sheridan, Niti Trivedi, Tony Wu, Yuhua Zong, Lindsey Cotton, Allison Ryan, Christopher Cisar, Alessandro Leal, Nicholas Dracopoli, Robert B. Scharpf, Victor E. Velculescu, Luke R. G. Pike

  • CORRESPONDENCE TO: velculescu@jhmi.edu

Abstract 摘要

Lung cancer screening via annual low-dose computed tomography (LDCT) has poor adoption. We conducted a prospective case-control study among 958 individuals eligible for lung cancer screening to develop a blood-based lung cancer detection test that when positive is followed by an LDCT. Changes in genome-wide cell-free DNA (cfDNA) fragmentation profiles (fragmentomes) in peripheral blood reflected genomic and chromatin characteristics of lung cancer. We applied machine learning to fragmentome features to identify individuals who were more or less likely to have lung cancer. We trained the classifier using 576 cases and controls from study samples, and then validated it in a held-out group of 382 cases and controls. The validation demonstrated high sensitivity for lung cancer, and consistency across demographic groups and comorbid conditions. Applying test performance to the screening eligible population in a five-year model with modest utilization assumptions suggested the potential to prevent thousands of lung cancer deaths.

每年通过低剂量计算机断层扫描(LDCT)进行的肺癌筛查率很低。我们对958名符合肺癌筛查条件的患者进行了前瞻性病例对照研究,以开发一种基于血液的癌症检测,当检测结果呈阳性时进行LDCT检查。外周血全基因组胞游离细胞DNA(cfDNA)片段组的变化反映了肺癌的基因组和染色质特征。我们将机器学习应用于碎片组特征分析,以识别或多或少可能性患有肺癌的个体。我们使用研究样本中的576个病例和对照对分类器进行了训练,然后在382个病例和对照中对其进行了验证。该验证证明了该检查对肺癌的高度敏感性,以及在人口统计学组和共病条件的一致性。在一个具有适度利用率假设的五年模型中,将测试性能应用于筛选合格人群,有可能预防数千例肺癌死亡。